> ## Documentation Index
> Fetch the complete documentation index at: https://developer.onecodex.com/llms.txt
> Use this file to discover all available pages before exploring further.

# The Alignment Resource

An Alignment is an [analysis](/api-reference/analysis-resource) providing sensitive local alignment of a WGS samples against a specific reference genome sample. It has the same properties as an analyses, but lacks the `analysis_type` field and also includes a `tax_id` field indicating the taxonmic ID of the genome against which the alignment was performed.

At this time, there are no v1 API routes for accessing the alignment statistics (e.g., percent identity, coverage, and depth), but alignments can be viewed on the One Codex platform directly. Here's [an example public alignment](https://app.onecodex.com/alignment/public/1aefe494c50d4260) and a list of [all alignments for that sample](https://app.onecodex.com/analysis/6d5247665454405a/alignments):

<img src="https://mintcdn.com/onecodex/DiToQ9fYtYBO3lRU/images/api/alignment_view.png?fit=max&auto=format&n=DiToQ9fYtYBO3lRU&q=85&s=249edcdcb7a479d106fd8cefa8c5292a" alt="" width="1259" height="1086" data-path="images/api/alignment_view.png" />
