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Documentation Index

Fetch the complete documentation index at: https://developer.onecodex.com/llms.txt

Use this file to discover all available pages before exploring further.

Assets are a straightforward way to include reference data such as genome databases or primer files that are required by your workflow. You can upload an asset via the One Codex web application, our API, or our command-line interface (CLI). Assets are shared with all members of your organization, so a single upload can be re-used across users and workflows. Once you’ve uploaded an asset, you can select it when defining your workflow, and it will be automatically injected into the working directory each time the workflow runs. The contents of an asset are immutable once uploaded, which means the reproducibility of your pipeline is ensured and you don’t need to worry about the availability of external resources when you run your workflow on One Codex.