The One Codex platform supports several types of analyses including metagenomic (or taxonomic) classification, in silico panels, and alignments. Additional analysis types are planned and will be added to the v1 API over time.
All user-viewable analyses are available via the
/api/v1/analyses route, while the
/api/v1/alignments routes provide listings of a subset of the same analyses with the relevant type. These specific resources provide more detailed information and additional routes, but represent the same underlying execution of a job against a sample.
The below table summarizes all of the properties for the Analysis resource, with the JSON schema type of each property listed below in italics.
The analysis ID encoded as an addressable URI
The type of analysis performed. Currently supported analysis types on the One Codex platform are:
Timestamp for when the analysis was created on the One Codex platform, encoded as a RFC 3339 timestamp
If the analysis is complete. Incomplete or pending analyses will show a icon in the One Codex web application.
An error message if the analysis failed. Should generally be
A reference to the versioned job underlying the analysis, e.g.,
A reference to the sample underlying the analysis, e.g.,