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API Basics
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Samples
The Sample Resource
GET
Retrieve All Samples
GET
Retrieve A Sample
GET
Retrieve Public Samples
Uploading Samples
PATCH
Updating Samples
POST
Downloading Sequence Data
Metadata & Tags
The Metadata Resource
The Tag Resource
GET
Retrieve All Metadata
GET
Retrieve A Metadata Record
GET
Retrieve All Tags
GET
Retrieve A Tag
PATCH
Updating Metadata
Analyses
The Analysis Resource
GET
Retrieve All Analyses
GET
Retrieve An Analysis
GET
Retrieve Analysis Results
GET
Retrieve Analysis Files
GET
Retrieve Analysis Output File Details
The Classification Resource
GET
Retrieve All Classifications
GET
Retrieve A Classification
GET
Retrieve Classification Results
GET
Read-Level Results
The Panel Resource
GET
Retrieve All Panels
GET
Retrieve A Panel
GET
Panel Results
The Alignment Resource
GET
Retrieve All Alignments
GET
Retrieve An Alignment
Jobs
The Job Resource
GET
Retrieve All Jobs
GET
Retrieve A Job
Documents
The Document Resource
GET
Retrieve All Documents
GET
Retrieve A Document
Uploading Documents
POST
Downloading Documents
Webhooks & Events
Using Webhooks
Checking Signatures
GET
Retrieve All Events
GET
Retrieve An Event
Sequencing
The Sequencing Batch Resource
GET
Retrieve All Sequencing Batches
GET
Retrieve A Sequencing Batch
POST
Registering a Sequencing Batch
GET
Retrieve Samples in a Sequencing Batch
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Jupyter Notebooks
We’re also happy to offer embedded
Jupyter
notebooks as part of the One Codex platform – facilitating both large-scale analyses and a nice environment for rapid development against our API. See our
blog post
announcing notebooks, take a look at an
example notebook
that uses the
One Codex Python client library
, or view our
more detailed notebook documentation
.
CLI & Client Library (Python)
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