• Getting Started
• Authentication
• API Documentation
• CLI & Client Library (Python)
• Jupyter Notebooks
• Pagination
• Errors

​

Samples

• The Sample Resource

• Retrieve All Samplesget

• Retrieve A Sampleget

• Retrieve Public Samplesget

• Uploading Samples

  • Starting an Uploadpost
  • Confirming an Uploadpost
  • Pre-Uploading Samplespost

• Updating Samplespatch

• Downloading Sequence Datapost

​

Metadata & Tags

• The Metadata Resource
• The Tag Resource
• Retrieve All Metadataget
• Retrieve A Metadata Recordget
• Retrieve All Tagsget
• Retrieve A Tagget
• Updating Metadatapatch

​

Analyses

• The Analysis Resource
• Retrieve All Analysesget
• Retrieve An Analysisget
• Retrieve Analysis Resultsget
• Retrieve Analysis Filesget
• Retrieve Analysis Output File Detailsget
• The Classification Resource
• Retrieve All Classificationsget
• Retrieve A Classificationget
• Classification Resultsget
• Read-Level Resultsget
• The Panel Resource
• Retrieve A Panelget
• Retrieve All Panelsget
• Panel Resultsget
• The Alignment Resource
• Retrieve All Alignmentsget
• Retrieve An Alignmentget

​

Jobs

• The Job Resource
• Retrieve All Jobsget
• Retrieve A Jobget

​

Documents

• The Document Resource

• Retrieve All Documentsget

• Retrieve A Documentget

• Uploading Documents

  • Starting a Document Uploadpost
  • Confirming a Document uploadpost

• Downloading Documentspost

​

Webhooks & Events

• Using Webhooks
• Checking Signatures
• Retrieve All Eventsget
• Retrieve An Eventget

​

Sequencing

• Sequencing Batches

  • Retrieving All Sequencing Batchesget
  • Retrieving a Sequencing Batchget
  • Registering a Sequencing Batchpost
  • Retrieving Samples in a Sequencing Batchget

​

The Panel Resource

The Panel is an analysis providing results for a set of marker sequences, which can range from very short sequences (e.g., 30-50 bases) to complete genes. These marker sequences are typically either predictive of function (e.g., antimicrobial resistance, virulence) or useful for typing (e.g., indicative of serotype or strain information). A panel has the same properties as an analyses (less the analysis_type field), and several additional routes that:

• Provide the sample-level panel results ( Experimental)