• Getting Started
• Authentication
• API Documentation
• CLI & Client Library (Python)
• Jupyter Notebooks
• Pagination
• Errors

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Samples

• The Sample Resource

• Retrieve All Samplesget

• Retrieve A Sampleget

• Retrieve Public Samplesget

• Uploading Samples

  • Starting an Uploadpost
  • Confirming an Uploadpost
  • Pre-Uploading Samplespost

• Updating Samplespatch

• Downloading Sequence Datapost

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Metadata & Tags

• The Metadata Resource
• The Tag Resource
• Retrieve All Metadataget
• Retrieve A Metadata Recordget
• Retrieve All Tagsget
• Retrieve A Tagget
• Updating Metadatapatch

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Analyses

• The Analysis Resource
• Retrieve All Analysesget
• Retrieve An Analysisget
• Retrieve Analysis Resultsget
• Retrieve Analysis Filesget
• Retrieve Analysis Output File Detailsget
• The Classification Resource
• Retrieve All Classificationsget
• Retrieve A Classificationget
• Classification Resultsget
• Read-Level Resultsget
• The Panel Resource
• Retrieve A Panelget
• Retrieve All Panelsget
• Panel Resultsget
• The Alignment Resource
• Retrieve All Alignmentsget
• Retrieve An Alignmentget

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Jobs

• The Job Resource
• Retrieve All Jobsget
• Retrieve A Jobget

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Documents

• The Document Resource

• Retrieve All Documentsget

• Retrieve A Documentget

• Uploading Documents

  • Starting a Document Uploadpost
  • Confirming a Document uploadpost

• Downloading Documentspost

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Webhooks & Events

• Using Webhooks
• Checking Signatures
• Retrieve All Eventsget
• Retrieve An Eventget

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Sequencing

• Sequencing Batches

  • Retrieving All Sequencing Batchesget
  • Retrieving a Sequencing Batchget
  • Registering a Sequencing Batchpost
  • Retrieving Samples in a Sequencing Batchget

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The Classification Resource

The Classification is an analysis providing metagenomic classification results for a sample. It has the same properties as an analyses (less the analysis_type field), and several additional routes that:

• Provide the sample-level classification results