Workflows Introduction

The Workflows feature allows One Codex users to create and run their own pipelines, right in the One Codex environment. Whether you are working with Nextflow or other scripts, you can develop your pipelines and then run them on your samples on One Codex.

The Workflows feature includes parameterization - allowing you to set parameters at the time of launching your pipeline. This means you can run your pipeline on the same sample with different variables. Learn more about parameters here.

You may need other files to be available for various workflows. The Assets feature allows you to upload files to One Codex, and call on them in your workflows, so that they are automatically injected into the working environment on each run of a workflow.

Learn more about the various features and details of Workflows through this guide!